Standalone CryoSPARC Install¶

If you would like to run CryoSPARC in Open OnDemand sessions perform the following steps:

Start a Console OOD session or open a terminal in the 'HiPerGator Desktop' OOD session.
Add your CryoSPARC LICENSE_ID to your ~/.bashrc file. e.g.
```
export LICENSE_ID=0993clda-1234-11ed-94f8-hprg8r9i2a93
```
Source ~/.bashrc (only if in the same session without logging out) with source ~/.bashrc.
Create a CryoSPARC installation directory in your /blue directory tree. E.g.
```
mkdir -p /blue/mygroup/$USER/apps/cryosparc
```
Change into the installation directory cd /blue/mygroup/$USER/apps/cryosparc

Download the installers

curl -L https://get.cryosparc.com/download/master-latest/$LICENSE_ID -o cryosparc_master.tar.gz
curl -L https://get.cryosparc.com/download/worker-latest/$LICENSE_ID -o cryosparc_worker.tar.gz

Unpack the installers:

tar zxf cryosparc_master.tar.gz
tar zxf cryosparc_worker.tar.gz

Load conda and cuda modules module load conda cuda

Run cryosparcm installation

cd cryosparc_master
./install.sh --standalone \
             --license ${LICENSE_ID} \
             --worker_path /blue/mygroup/$USER/apps/cryosparc/cryosparc_worker \
             --cudapath ${HPC_CUDA_DIR} \
             --initial_email mygatorlink@ufl.edu \
             --initial_password test123 \
             --initial_name mygatorlink \

Running CryoSPARC¶

Start a Console OOD session or open a terminal in the 'HiPerGator Desktop' OOD session.
Add the cryosparc_master directory to your $PATH. E.g. export PATH=/blue/mygroup/$USER/apps/cryosparc/cryosparc_master/bin:$PATH
Start the service cryosparcm start