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xtea

Description

xtea website

xTea (comprehensive transposable element analyzer) is designed to identify TE insertions from paired-end Illumina reads, barcode linked-reads, long reads (PacBio or Nanopore), or hybrid data from different sequencing platforms and takes whole-exome sequencing (WES) or whole-genome sequencing (WGS) data as input. * XTEA_FOLDER - xTea directory

Environment Modules

Run module spider xtea to find out what environment modules are available for this application.

Environment Variables

  • HPC_XTEA_DIR - installation directory
  • HPC_XTEA_BIN - executable directory

Categories

genomics