WoLFPSort¶

Description¶

WoLF PSORT is an extension of the PSORT II program for protein subcellular localization prediction, which is based on the PSORT principle. WoLF PSORT converts a protein's amino acid sequences into numerical localization features; based on sorting signals, amino acid composition and functional motifs. After conversion, a simple k-nearest neighbor classifier is used for prediction.

Environment Modules¶

Run module spider wolfpsort to find out what environment modules are available for this application.

Environment Variables¶

HPC_WOLFPSORT_DIR - installation directory
HPC_WOLFPSORT_BIN - executable directory
HPC_WOLFPSORT_DOC - documentation directory
HPC_WOLFPSORT_EXE - examples directory

Citation¶

If you publish research that uses wolfpsort you have to cite it as follows:

Horton, P., Park, K. J., Obayashi, T., & Nakai, K. (2006). Protein Subcellular Localization Prediction with WoLF PSORT. In Proceedings of the 4th Asia-Pacific Bioinformatics Conference (APBC 2006) (pp. 39-48). https://doi.org/10.1142/9781860947292_0006

Categories¶

phylogenetics