winnowmap¶

Description¶

Winnowmap is a long-read mapping algorithm optimized for mapping ONT and PacBio reads to repetitive reference sequences. You will need to load all module(s) on any one of the lines below before the "winnowmap/2.03" module is available to load. gcc/12.2.0

Environment Modules¶

Run module spider winnowmap to find out what environment modules are available for this application.

Environment Variables¶

HPC_WINNOWMAP_DIR - installation directory
HPC_WINNOWMAP_BIN - executable directory

Categories¶

biology, genomics, ngs, mapping