wfmash¶

Description¶

wfmash is an aligner for pangenomes based on sparse homology mapping and wavefront inception.wfmash is the key algorithm in pggb (the PanGenome Graph Builder), where it is applied to make an all-to-all alignmentof input genomes that defines the base structure of the pangenome graph. It can scale to support the all-to-all alignment of hundreds of human genomes.

Environment Modules¶

Run module spider wfmash to find out what environment modules are available for this application.

Environment Variables¶

HPC_WFMASH_DIR - installation directory
HPC_WFMASH_BIN - executable directory

Categories¶

phylogenetics