wasp¶

Description¶

WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery. WASP has two parts, which can be used independently of each other: * Read filtering tools that correct for biases in allele-specific mapping. * A Combined Haplotype Test (CHT) that tests for genetic association with a molecular trait using counts of mapped and allele-specific reads.

Environment Modules¶

Run module spider wasp to find out what environment modules are available for this application.

Environment Variables¶

HPC_WASP_DIR - installation directory
HPC_WASP_BIN - executable directory
WASP - scripts directory

Categories¶

biology, genomics