vt¶
Description¶
vt is a variant tool set that discovers short variants from Next Generation Sequencing data.
Environment Modules¶
Run module spider vt to find out what environment modules are available for this application.
Environment Variables¶
- HPC_VT_DIR - installation directory
- HPC_VT_BIN - executable directory
Citation¶
If you publish research that uses vt you have to cite it as follows:
Tan, A., Abecasis, G. R., & Kang, H. M. (2015). Unified representation of genetic variants. Bioinformatics, 31(13), 2202-2204. https://doi.org/10.1093/bioinformatics/btv112
Categories¶
biology, genomics