Usage

$ module load virseive/20210406 $ VirSieveIVar /blue/groupname/username/virsieve_test/

Each tool also has the ability to set non-default options via environment variables. Since we are running these tools w>```
$ module load virsieve/20210406
$ export SINGULARITYENV_PRIMERBED=/path/to/mycustom.bed
$ VirSieveIVar /blue/groupname/username/virsieve_test/

The expected working directory structure and lists of the available environment variables for each tool can be found on>https://www.github.com/Zymo-Research/VirSieveAlign https://www.github.com/Zymo-Research/VirSieveGATK https://www.github.com/Zymo-Research/VirSieveIVar https://www.github.com/Zymo-Research/VirSieveVEP https://www.github.com/Zymo-Research/VirSieveVEP