Usage

To run Virclust, use the following command: Rscript $HPC_VIRCLUST_BIN/VirClust_MASTER.R sing=conda condaenvpath=$HPC_VIRCLUST_DIR [...options]

interproscan=$HPC_VIRCLUST_IPRSCANDB #when annotating against InterProScan db

blastdb=$HPC_VIRCLUST_BLASTDB #when annotating against NR blast db

databases=$HPC_VIRCLUST_DB #when annotating against other db