vigor4

Description

vigor4 website

VIGOR4 (Viral Genome ORF Reader) is a Java application to predict protein sequences encoded in viral genomes. VIGOR4 determines the protein coding sequences by sequence similarity searching against curated viral protein databases. Vigor4 uses the VIGOR_DB project which currently has databases for the following viruses: * entovirus - Enterovirus * flua - Influenza A (human, avian, and swine) * flub - Influenza B (human, avian, and swine) * fluc - Influenza C (human) * rtva - Rotavirus A * rtvb - Rotavirus B * rtvc - Rotavirus C * rtvf - Rotavirus F * rtvg - Rotavirus G * sapo - Sapovirus * sarscov2 - SARS-CoV-2 * wnvI - West Nile Virus, Lineage I * wnvII - West Nile Virus, Lineage II * zikv - Zika Virus Check VIGOR_DB for additional databases. * VIGOR_DB - database directory

Environment Modules

Run module spider vigor4 to find out what environment modules are available for this application.

Environment Variables

• HPC_VIGOR4_DIR - installation directory
• HPC_VIGOR4_BIN - executable directory

Categories

biology, annotation