VEP¶

Description¶

Variant Effect Predictor (VEP) allows you to analyse your variation data locally. No limits, powerful, fast and extendable, VEP is the best way to get the most out of the Ensembl.

Environment Modules¶

Run module spider vep to find out what environment modules are available for this application.

Environment Variables¶

HPC_VEP_BIN - executable directory
HPC_VEP_DIR - installation directory
HPC_VEP_CACHE - cache directory

Citation¶

If you publish research that uses vep you have to cite it as follows:

McLaren et. al. (doi:10.1093/bioinformatics/btq330)

Categories¶

biology, genomics, ngs