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Velvet

Description

velvet website

Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454 or SOLiD We provide velveth and velvetg executables built with several different kmer lengths and OMP support: velveth, velvetg - MAXKMERLENGTH=31. velveth_max99, velvetg_max99 - MAXKMERLENGTH=99. velveth_OMP, velvetg_OMP - MAXKMERLENGTH=31, OpenMP support. velveth_max99_OMP, velvetg_max99_OMP - MAXKMERLENGTH=99, OpenMP support. velveth_de, velvetg_de - MAXKMERLENGTH=31, color support (454).

Environment Modules

Run module spider velvet to find out what environment modules are available for this application.

Environment Variables

  • HPC_VELVET_DIR - installation directory
  • HPC_VELVET_BIN - executable directory
  • HPC_VELVET_EX - example data directory
  • HPC_VELVET_DOC - documentation directory
  • HPC_VELVET_CONTRIB - contributed scripts directory

Categories

biology, genomics