Usage

By default vcftools uses /tmp for temporary file storage. As explained in vcftools documentation you should use the --temp argument to point vcftools to a directory in your /blue space instead since HiPerGator2 nodes are diskless and the /tmp directory on them is very small. For example, the following can be used in a job script:

mkdir -p tmp
export TMPDIR="$(pwd)/tmp"

vcftools ... --temp ${TMPDIR}