VAST-TOOLS

Description

vast-tools website

Vertebrate Alternative Splicing and Transcription Tools (VAST-TOOLS) is a toolset for profiling alternative splicing events in RNA-Seq data.

Environment Modules

Run module spider vast-tools to find out what environment modules are available for this application.

Environment Variables

• HPC_VAST_TOOLS_DIR - installation directory
• HPC_VAST_TOOLS_BIN - executable directory

Additional Usage Information

Two VASTDB databases provided by the project have been downloaded and installed into the default location * Hsa (vastdb.hsa.7.3.14, human) * Mmu (vastdb.mmu.7.3.14, mouse)

Categories

biology, rna-seq, ngs