v-pipe¶

Description¶

V-pipe is a bioinformatics pipeline that integrates various computational tools for the analysis of viral high-throughput sequencing data. It supports the reproducible analysis of genomic diversity in intra-host virus populations, which is often involved in viral pathogenesis and virulence.

Environment Modules¶

Run module spider v-pipe to find out what environment modules are available for this application.

Environment Variables¶

HPC_VPIPE_DIR - installation directory
HPC_VPIPE_BIN - executable directory

Citation¶

If you publish research that uses v-pipe you have to cite it as follows:

Posada-Céspedes S., Seifert D., Topolsky I., Jablonski K., Metzner K.J., and Beerenwinkel N. 2021. "V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput sequencing data." Bioinformatics, January. doi:10.1093/bioinformatics/btab015.

Categories¶

biology, genomics, sequencing