v-pipe¶

Description¶

V-pipe is a bioinformatics pipeline that integrates various computational tools for the analysis of viral high-throughput sequencing data. It supports the reproducible analysis of genomic diversity in intra-host virus populations, which is often involved in viral pathogenesis and virulence.

Environment Modules¶

Run module spider v-pipe to find out what environment modules are available for this application.

Environment Variables¶

HPC_VPIPE_DIR - installation directory
HPC_VPIPE_BIN - executable directory

Citation¶

If you publish research that uses v-pipe you have to cite it as follows:

Posada-Céspedes, S., Seifert, D., Topolsky, I., Jablonski, K., Metzner, K. J., & Beerenwinkel, N. (2021). V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput sequencing data. Bioinformatics, 37(18), 2991-2993. https://doi.org/10.1093/bioinformatics/btab015

Categories¶

biology, genomics, sequencing