UMICollapse

Description

umicollapse website

Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI).

Environment Modules

Run module spider umicollapse to find out what environment modules are available for this application.

Environment Variables

• HPC_UMICOLLAPSE_DIR - installation directory
• HPC_UMICOLLAPSE_BIN - executable directory

Citation

If you publish research that uses UMICollapse you have to cite it as follows:

liu2019algorithms, Algorithms for efficiently collapsing reads with Unique Molecular Identifiers, Liu, Daniel, bioRxiv, 2019, Cold Spring Harbor Laboratory

Categories

chemestry