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Trycycler

Description

trycycler website

Trycycler is a tool for generating consensus long-read assemblies for bacterial genomes. I.e. if you have multiple long-read assemblies for the same isolate, Trycycler can combine them into a single assembly that is better than any of your inputs.

Environment Modules

Run module spider trycycler to find out what environment modules are available for this application.

Environment Variables

  • HPC_TRYCYCLER_DIR - installation directory
  • HPC_TRYCYCLER_BIN - executable directory

Citation

If you publish research that uses trycycler you have to cite it as follows:

Wick RR, Judd LM, Cerdeira LT, Hawkey J, Méric G, Vezina B, Wyres KL, Holt KE. Trycycler: consensus long-read assemblies for bacterial genomes. bioRxiv. 2021. http://doi.org/10.1101/2021.07.04.451066.

Categories

phylogenetics