trvz

Description

trvz website

TRVZ is a companion tool with TRGT for visualization of reads overlapping the repeats. TRGT is a tool for targeted genotyping of tandem repeats from PacBio HiFi data. In addition to the basic size genotyping, TRGT profiles sequence composition, mosaicism, and CpG methylation of each analyzed repeat. Modules system sets up the following environment variables for this module:

Environment Modules

Run module spider trvz to find out what environment modules are available for this application.

Environment Variables

• HPC_TRVZ_DIR - installation directory
• HPC_TRVZ_BIN - executable directory

Categories

genetics, biology