TRUST4

Description

trust4 website

Tcr Receptor Utilities for Solid Tissue (TRUST) is a computational tool to analyze TCR and BCR sequences using unselected RNA sequencing data, profiled from solid tissues, including tumors. TRUST4 performs de novo assembly on V, J, C genes including the hypervariable complementarity-determining region 3 (CDR3) and reports consensus of BCR/TCR sequences. TRUST4 then realigns the contigs to IMGT reference gene sequences to report the corresponding information. TRUST4 supports both single-end and paired-end sequencing data with any read length.

Environment Modules

Run module spider trust4 to find out what environment modules are available for this application.

Environment Variables

• HPC_TRUST4_DIR - installation directory
• HPC_TRUST4_BIN - executable directory

Categories

phylogenetics