triobinning¶
Description¶
Programs implementing the trio-binning genome assembly method.
Environment Modules¶
Run module spider triobinning to find out what environment modules are available for this application.
Environment Variables¶
- HPC_TRIOBINNING_DIR - installation directory
- HPC_TRIOBINNING_BIN - executable directory
Citation¶
If you publish research that uses triobinning you have to cite it as follows:
Koren, S., Rhie, A., Walenz, B. P., Dilthey, A. T., Bickhart, D. M., Kingan, S. B., Hiendleder, S., Williams, J. L., Smith, T. P. L., & Phillippy, A. M. (2018). Complete assembly of parental haplotypes with trio binning. Nature Biotechnology. https://doi.org/10.1038/nbt.4277
Rice, E. S., Koren, S., Rhie, A., Heaton, M. P., Kalbfleisch, T. S., Hardy, T., Hackett, P. H., Bickhart, D. M., Rosen, B. D., Ley, B. V., Maurer, N. W., Green, R. E., Phillippy, A. M., & Petersen, J. L. (2020). Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle. GigaScience, 9(4), giaa029. https://doi.org/10.1093/gigascience/giaa029
Categories¶
genomics, biology