TriMetAss¶
Description¶
TriMetAss is an extension to the Trinity software [1], which can assemble select regions surrounding interesting features in metagenomic data. The software is particularly useful for very common and well-conserved genes (and – in theory – non-coding regions) that can occur in multiple contexts in the microbial community under study. It uses Vmatch [2] to extend seed reads (or contigs generated by another assembler) into longer contigs, by iteratively calling Vmatch and Trinity, until some stop criteria are met
Environment Modules¶
Run module spider trimetass to find out what environment modules are available for this application.
Environment Variables¶
- HPC_TRIMETASS_DIR - installation directory
- HPC_TRIMETASS_BIN - executable directory
- HPC_TRIMETASS_DOC - documentation directory
Citation¶
If you publish research that uses trimetass you have to cite it as follows:
Categories¶
biology, ngs