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traitRate

Description

traitrate website

traitRate is a program for the detection of trait-dependent shifts in the rate of sequence evolution.

Environment Modules

Run module spider traitrate to find out what environment modules are available for this application.

Environment Variables

  • HPC_TRAITRATE_DIR - installation directory
  • HPC_TRAITRATE_BIN - executable directory
  • HPC_TRAITRATE_EXE - examples directory

Additional Usage Information

Sample input files are available at http://www.tau.ac.il/~itaymay/cp/traitRate/index.html and in the $HPC_TRAITRATE_EXE directory.

To run the program, type traitrate params.txt

Citation

If you publish research that uses traitrate you have to cite it as follows:

Mayrose, I., & Otto, S. P. (2011). A likelihood method for detecting trait-dependent shifts in the rate of molecular evolution. Molecular biology and evolution, 28(1), 759–770. https://doi.org/10.1093/molbev/msq263

Categories

biology, genomics