traitRate

Description

traitrate website

traitRate is a program for the detection of trait-dependent shifts in the rate of sequence evolution. Sample input files are available at http://www.tau.ac.il/~itaymay/cp/traitRate/index.html and in the Run the program by typing 'traitrate params.txt'

Environment Modules

Run module spider traitrate to find out what environment modules are available for this application.

Environment Variables

"$HPC_TRAITRATE_EXE" directory. * HPC_TRAITRATE_DIR - installation directory * HPC_TRAITRATE_BIN - executable directory * HPC_TRAITRATE_EXE - examples directory

Citation

If you publish research that uses traitrate you have to cite it as follows:

Mayrose I and Otto SP. 2011. A Likelihood Method for Detecting Trait-Dependent Shifts in the Rate of Molecular Evolution. Mol Biol Evol. 28:781-791.

Categories

biology, genomics