TraCeR¶

Description¶

This tool reconstructs the sequences of rearranged and expressed T cell receptor genes from single-cell RNA-seq data. It then uses the TCR sequences to identify cells that have the same receptor sequences and so derive from the same original clonally-expanded cell. For more information on TraCeR, its validation and how it can be applied to investigate T cell populations during infection, see our paper in Nature Methods or the bioRxiv preprint that preceded it.

Environment Modules¶

Run module spider tracer to find out what environment modules are available for this application.

Environment Variables¶

HPC_TRACER_DIR - installation directory
HPC_TRACER_BIN - executable directory
HPC_TRACER_DOC - documentation directory
HPC_TRACER_EXE - examples directory

Categories¶

biology, phylogenetics