Tigmint¶
Description¶
Tigmint identifies and corrects misassemblies using linked reads from 10x Genomics Chromium. The reads are first aligned to the assembly, and the extents of the large DNA molecules are inferred from the alignments of the reads. The physical coverage of the large molecules is more consistent and less prone to coverage dropouts than that of the short read sequencing data. The sequences are cut at positions that have insufficient spanning molecules. Tigmint outputs a BED file of these cut points, and a FASTA file of the cut sequences.
Environment Modules¶
Run module spider tigmint to find out what environment modules are available for this application.
Environment Variables¶
- HPC_TIGMINT_DIR - installation directory
- HPC_TIGMINT_BIN - executable directory
Citation¶
If you publish research that uses tigmint you have to cite it as follows:
Categories¶
phylogenetics