tiberius¶

Description¶

Tiberius is a deep learning-based ab initio gene structure prediction tool that end-to-end integrates convolutional and long short-term memory layers with a differentiable HMM layer. It can be used to predict gene structures from genomic sequences only (ab initio), while matching the accuracy of tool that use extrinsic evidence.

Additionally, Tiberius provides an evidence mode that generates highly precise gene structures from extrinsic evidence, which are then combined with Tiberius ab initio predictions. Tiberius can also be parallelized on HPC systems using Nextflow.

Environment Modules¶

Run module spider tiberius to find out what environment modules are available for this application.

Environment Variables¶

HPC_TIBERIUS_DIR - installation directory
HPC_TIBERIUS_BIN - executable directory

Categories¶

biology, genomics, annotation