Themisto

Description

themisto website

Themisto is an external memory construction of a compressed colored de-bruijn graph of order k supporting fast pseudo-alignment, see https://www.helsinki.fi/en/researchgroups/genome-scale-algorithmics/themisto.

Environment Modules

Run module spider themisto to find out what environment modules are available for this application.

Environment Variables

• HPC_THEMISTO_DIR - installation directory
• HPC_THEMISTO_BIN - executable directory

Citation

If you publish research that uses themisto you have to cite it as follows:

Tommi Mäklin, Teemu Kallonen, Jarno Alanko, Veli Mäkinen, Jukka Corander, Antti Honkela. Genomic Epidemiology with Mixed Samples. Supplement: Pseudoalignment in the mGEMS pipeline.

Categories

genomics, alignment