TGSGapCloser¶

Description¶

A gap-closing software tool that uses error-prone long reads generated by third-generation-sequence techniques (Pacbio, Oxford Nanopore, etc.) or preassembled contigs to fill N-gap in the genome assembly.

Environment Modules¶

Run module spider tgsgapcloser to find out what environment modules are available for this application.

Environment Variables¶

HPC_TGSGAPCLOSER_DIR - installation directory
HPC_TGSGAPCLOSER_BIN - executable directory

Citation¶

If you publish research that uses tgsgapcloser you have to cite it as follows:

Mengyang Xu, Lidong Guo, Shengqiang Gu, Ou Wang, Rui Zhang, Brock A Peters, Guangyi Fan, Xin Liu, Xun Xu, Li Deng, Yongwei Zhang, TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads, GigaScience, Volume 9, Issue 9, September 2020, giaa094, https://doi.org/10.1093/gigascience/giaa094

Categories¶

phylogenetics