tcoffee¶

Description¶

T-Coffee is a multiple sequence alignment package. You can use T-Coffee to align sequences or to combine the output of your favorite alignment methods (Clustal, Mafft, Probcons, Muscle...) into one unique alignment (M-Coffee).

Environment Modules¶

Run module spider tcoffee to find out what environment modules are available for this application.

Environment Variables¶

HPC_TCOFFEE_DIR - installation directory
HPC_TCOFFEE_BIN - executable directory

Citation¶

If you publish research that uses tcoffee you have to cite it as follows:

Notredame, C., Higgins, D. G., & Heringa, J. (2000). T-Coffee: A novel method for fast and accurate multiple sequence alignment. Journal of molecular biology, 302(1), 205–217. https://doi.org/10.1006/jmbi.2000.4042

Categories¶

biology