tcoffee¶

Description¶

This module lets you use the T-Cofee software.

T-Coffee is a multiple sequence alignment package. You can use T-Coffee to align sequences or to combine the output of your favorite alignment methods (Clustal, Mafft, Probcons, Muscle...) into one unique alignment (M-Coffee).

Environment Modules¶

Run module spider tcoffee to find out what environment modules are available for this application.

Environment Variables¶

Citation¶

If you publish research that uses tcoffee you have to cite it as follows:

Notredame, C., Higgins, D. G., & Heringa, J. (2000). T-Coffee: A novel method for fast and accurate multiple sequence alignment. Journal of molecular biology, 302(1), 205–217. https://doi.org/10.1006/jmbi.2000.4042

Categories¶

biology