tapir¶
Description¶
tapir contains programs to estimate and plot phylogenetic informativeness for large datasets.
Environment Modules¶
Run module spider tapir to find out what environment modules are available for this application.
Environment Variables¶
- HPC_TAPIR_DIR - installation directory
- HPC_TAPIR_BIN - executable directory
Citation¶
If you publish research that uses tapir you have to cite it as follows:
- Faircloth, B. C., Chang, J., & Alfaro, M. E. (2012). TAPIR enables high throughput analysis of phylogenetic informativeness. arXiv:1202.1215. https://doi.org/10.48550/arXiv.1202.1215
- Townsend, J. P. (2007). Profiling phylogenetic informativeness. Systematic Biology, 56(2), 222-231. https://doi.org/10.1080/10635150701311362
- Pond, S. L. K., Frost, S. D. W., & Muse, S. V. (2005). HyPhy: hypothesis testing using phylogenies. Bioinformatics, 21(5), 676-679. https://doi.org/10.1093/bioinformatics/bti079
Categories¶
biology, phylogenetics