talon¶

Description¶

TALON is a Python package for identifying and quantifying known and novel genes/isoforms in long-read transcriptome data sets. TALON is technology-agnostic in that it works from mapped SAM files, allowing data from different sequencing platforms (i.e. PacBio and Oxford Nanopore) to be analyzed side by side.

Environment Modules¶

Run module spider talon to find out what environment modules are available for this application.

Environment Variables¶

HPC_TALON_DIR - installation directory
HPC_TALON_BIN - executable directory

Citation¶

If you publish research that uses talon you have to cite it as follows:

A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification. Dana Wyman, Gabriela Balderrama-Gutierrez, Fairlie Reese, Shan Jiang, Sorena Rahmanian, Weihua Zeng, Brian Williams, Diane Trout, Whitney England, Sophie Chu, Robert C. Spitale, Andrea J. Tenner, Barbara J. Wold, Ali Mortazavi bioRxiv 672931; doi: https://doi.org/10.1101/672931

Categories¶

biology, sequencing