syri¶

Description¶

SyRI is a comprehensive tool for predicting genomic differences between related genomes using whole-genome assemblies (WGA).

Environment Modules¶

Run module spider syri to find out what environment modules are available for this application.

Environment Variables¶

HPC_SYRI_DIR - installation directory
HPC_SYRI_BIN - executable directory

Citation¶

If you publish research that uses syri you have to cite it as follows:

Goel, M., Sun, H., Jiao, W. et al. SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies. Genome Biol 20, 277 (2019) doi:10.1186/s13059-019-1911-0

Categories¶

genomics, biology