superfold¶

Description¶

SuperFold is a pipeline that uses output data from ShapeMapper to model RNA secondary structures, including pseudoknots; identify de novo regions with well-defined and stable structures; and visualize most probable and alternative helices.

DATAPATH - RNAStructure Data Tables

Environment Modules¶

Run module spider superfold to find out what environment modules are available for this application.

Environment Variables¶

HPC_SUPERFOLD_DIR - installation directory
HPC_SUPERFOLD_BIN - executable directory

Categories¶

biology, genetics