SuperCRUNCH¶

Description¶

SuperCRUNCH is a python toolkit for creating and working with phylogenetic datasets. SuperCRUNCH can be run using any set of sequence data, as long as sequences are in fasta format with standard naming conventions.

Environment Modules¶

Run module spider supercrunch to find out what environment modules are available for this application.

Environment Variables¶

HPC_SUPERCRUNCH_DIR - installation directory
HPC_SUPERCRUNCH_BIN - executable directory
HPC_SUPERCRUNCH_DOC - documentation directory
HPC_SUPERCRUNCH_DAT - data directory

Citation¶

If you publish research that uses supercrunch you have to cite it as follows:

Portik, D.M., and J.J. Wiens. (2020) SuperCRUNCH: A bioinformatics toolkit for creating and manipulating supermatrices and other large phylogenetic datasets. Methods in Ecology and Evolution, Early View.

Categories¶

phylogenetics