Subread¶
Description¶
The Subread package: a tool kit for processing next-gen sequencing data
Environment Modules¶
Run module spider subread to find out what environment modules are available for this application.
Environment Variables¶
- HPC_SUBREAD_DIR - installation directory
- HPC_SUBREAD_BIN - executable directory
- HPC_SUBREAD_DOC - documentation directory
- HPC_SUBREAD_ANN - annotation directory
- HPC_SUBREAD_EXE - test directory
Citation¶
If you publish research that uses subread you have to cite it as follows:
If you use the Subread or Subjunc aligners, please cite: Liao Y, Smyth GK and Shi W (2013). The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote. Nucleic Acids Research, 41(10):e108
If you use the featureCounts program, please cite: Liao Y, Smyth GK and Shi W (2014). featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics, 30(7):923-30
Categories¶
biology, sequencing, variant_calling