Subread¶
Description¶
The Subread package: a tool kit for processing next-gen sequencing data
Environment Modules¶
Run module spider subread to find out what environment modules are available for this application.
Environment Variables¶
- HPC_SUBREAD_DIR - installation directory
- HPC_SUBREAD_BIN - executable directory
- HPC_SUBREAD_DOC - documentation directory
- HPC_SUBREAD_ANN - annotation directory
- HPC_SUBREAD_EXE - test directory
Citation¶
If you publish research that uses subread you have to cite it as follows:
If you use the Subread or Subjunc aligners, please cite: - Liao, Y., Smyth, G. K., & Shi, W. (2013). The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote. Nucleic acids research, 41(10), e108. https://doi.org/10.1093/nar/gkt214
If you use the featureCounts program, please cite: - Liao, Y., Smyth, G. K., & Shi, W. (2014). featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics (Oxford, England), 30(7), 923–930. https://doi.org/10.1093/bioinformatics/btt656
Categories¶
biology, sequencing, variant_calling