subphaser¶
Description¶
Phase and visualize subgenomes of an allopolyploid or hybrid based on the repetitive kmers. Installation notes:
Environment Modules¶
Run module spider subphaser to find out what environment modules are available for this application.
Environment Variables¶
- HPC_SUBPHASER_DIR - installation directory
- HPC_SUBPHASER_BIN - executable directory
Citation¶
If you publish research that uses subphaser you have to cite it as follows:
Jia K, Wang Z, Wang L et. al. SubPhaser: A robust allopolyploid subgenome phasing method based on subgenome-specific k-mers [J]. New Phytologist, 2022, in press DOI:10.1111/nph.18173
Categories¶
sequencing, biology