subphaser¶
Description¶
Phase and visualize subgenomes of an allopolyploid or hybrid based on the repetitive kmers.
Installation notes:
Environment Modules¶
Run module spider subphaser to find out what environment modules are available for this application.
Environment Variables¶
- HPC_SUBPHASER_DIR - installation directory
- HPC_SUBPHASER_BIN - executable directory
Citation¶
If you publish research that uses subphaser you have to cite it as follows:
Jia, K., Wang, Z., Wang, L., Li, Y., Liu, H., Liu, X., Jiang, Y., Zhang, Q., & Guo, H. (2022). SubPhaser: a robust allopolyploid subgenome phasing method based on subgenome-specific k-mers. New Phytologist, 235(2), 684-697. https://doi.org/10.1111/nph.18173
Categories¶
sequencing, biology