stringMLST

Description

stringmlst website

Fast k-mer based tool for multi locus sequence typing (MLST) stringMLST is a tool for detecting the MLST of an isolate directly from the genome sequencing reads. stringMLST predicts the ST of an isolate in a completely assembly and alignment free manner. The tool is designed in a light-weight, platform-independent fashion with minimum dependencies.

Environment Modules

Run module spider stringmlst to find out what environment modules are available for this application.

Environment Variables

• HPC_STRINGMLST_DIR - installation directory
• HPC_STRINGMLST_BIN - executable directory

Categories

biology, chip-seq