Strainline¶

Description¶

Here, we present Strainline, a novel approach to assemble viral haplotypes from noisy long reads without a reference genome. As a crucial consequence, Strainline is the first approach to provide strain-resolved, full-length de novo assemblies of viral quasispecies from noisy third-generation sequencing data.

Environment Modules¶

Run module spider strainline to find out what environment modules are available for this application.

Environment Variables¶

HPC_STRAINLINE_DIR - installation directory
HPC_STRAINLINE_BIN - executable directory

Categories¶

biology