Skip to content

Strainberry

Description

strainberry website

Strainberry is a method that performs strain separation in low-complexity metagenomes using error-prone long-read technologies. It exploits state-of-the-art tools for variant calling, haplotype phasing, and genome assembly, in order to achieve single-sample assembly of strains with higher quality than other state-of-the-art long-read assemblers.

Environment Modules

Run module spider strainberry to find out what environment modules are available for this application.

Environment Variables

  • HPC_STRAINBERRY_DIR - installation directory
  • HPC_STRAINBERRY_BIN - executable directory

Categories

biology, genomics, assembly