STAR-Fusion¶

Description¶

STAR-Fusion is a component of the Trinity Cancer Transcriptome Analysis Toolkit (CTAT). STAR-Fusion uses the STAR aligner to identify candidate fusion transcripts supported by Illumina reads. STAR-Fusion further processes the output generated by the STAR aligner to map junction reads and spanning reads to a reference annotation set.

Environment Modules¶

Run module spider star-fusion to find out what environment modules are available for this application.

Environment Variables¶

HPC_STARFUSION_DIR - installation directory

Citation¶

If you publish research that uses star-fusion you have to cite it as follows:

A STAR-Fusion manuscript preprint is now available on bioRxiv

Categories¶

biology, sequencing