STAR-Fusion¶

Description¶

STAR-Fusion is a component of the Trinity Cancer Transcriptome Analysis Toolkit (CTAT). STAR-Fusion uses the STAR aligner to identify candidate fusion transcripts supported by Illumina reads. STAR-Fusion further processes the output generated by the STAR aligner to map junction reads and spanning reads to a reference annotation set.

Environment Modules¶

Run module spider star-fusion to find out what environment modules are available for this application.

Environment Variables¶

HPC_STARFUSION_DIR - installation directory

Citation¶

If you publish research that uses star-fusion you have to cite it as follows:

Brian J. Haas, Alex Dobin, Nicolas Stransky, Bo Li, Xiao Yang, Timothy Tickle, Asma Bankapur, Carrie Ganote, Thomas G. Doak, Nathalie Pochet, Jing Sun, Catherine J. Wu, Thomas R. Gingeras, Aviv Regev. STAR-Fusion: Fast and Accurate Fusion Transcript Detection from RNA-Seq. https://doi.org/10.1101/120295

Categories¶

biology, sequencing