Stacks¶

Description¶

Stacks is a software pipeline for building loci out of a set of short-read sequenced samples. Stacks was developed for the purpose of building genetic maps from RAD-Tag Illumina sequence data, but can also be readily applied to population studies, and phylogeography.

Environment Modules¶

Run module spider stacks to find out what environment modules are available for this application.

Environment Variables¶

HPC_STACKS_DIR - installation directory
HPC_STACKS_BIN - executable directory

Categories¶

biology, genomics, ngs