Stacks

Description

stacks website

Stacks is a software pipeline for building loci out of a set of short-read sequenced samples. Stacks was developed for the purpose of building genetic maps from RAD-Tag Illumina sequence data, but can also be readily applied to population studies, and phylogeography.

Environment Modules

Run module spider stacks to find out what environment modules are available for this application.

Environment Variables

• HPC_STACKS_DIR - installation directory
• HPC_STACKS_BIN - executable directory

Additional Usage Information

This software is intended to be used with OpenOnDemand. For instructions on starting an OOD session, please visit the OOD Help Page.

Categories

biology, genomics, ngs