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SRA

Description

sra website

The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives. The toolkit contains loading and dumping tools with their respective libraries for building new and accessing existing runs. The online documentation is located at https://github.com/ncbi/sra-tools/wiki

Environment Modules

Run module spider sra to find out what environment modules are available for this application.

Environment Variables

  • HPC_SRA_DIR - location of the installation directory
  • HPC_SRA_BIN - location of the executables directory
  • HPC_SRA_DOC - location of the documentation directory

Categories

biology, ngs