squigglekit¶

Description¶

SquiggleKit: A toolkit for manipulating nanopore signal data

Run module spider squigglekit to find out what environment modules are available for this application.

Load the SquiggleKit module into your environment:

module load squigglekit/1.0.0

Fetch specific .fast5 files from an archive or list of read IDs. This helps isolate target reads from a large nanopore dataset:

fast5_fetcher.py

Generate visualizations of raw nanopore signal data for inspection or quality control:

SquigglePlot.py

Extract signal traces and metadata from .fast5 files for downstream analysis or plotting:

SquigglePull.py

visualization, biology