SQANTI3

Description

sqanti3 website

Welcome to SQANTI: Structural and Quality Annotation of Novel Transcript Isoforms

Environment Modules

Run module spider sqanti3 to find out what environment modules are available for this application.

Environment Variables

• HPC_SQANTI3_DIR - installation directory
• HPC_SQANTI3_BIN - executable directory

Citation

If you publish research that uses sqanti3 you have to cite it as follows:

Tardaguila M, de la Fuente L, Marti C, et al. SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification. Genome Res. 2018;28(3):396-411. doi:10.1101/gr.222976.117

Categories

phylogenetics