SQANTI3¶
Description¶
Welcome to SQANTI: Structural and Quality Annotation of Novel Transcript Isoforms
Environment Modules¶
Run module spider sqanti3 to find out what environment modules are available for this application.
Environment Variables¶
- HPC_SQANTI3_DIR - installation directory
- HPC_SQANTI3_BIN - executable directory
Citation¶
If you publish research that uses sqanti3 you have to cite it as follows:
Tardaguila M, de la Fuente L, Marti C, et al. SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification. Genome Res. 2018;28(3):396-411. http://doi.org/10.1101/gr.222976.117
Categories¶
phylogenetics