SQANTI3¶

Description¶

SQANTI3 is the first module of the Functional IsoTranscriptomics (FIT) framework, that also includes IsoAnnot and tappAS.

Environment Modules¶

Run module spider sqanti3 to find out what environment modules are available for this application.

Environment Variables¶

HPC_SQANTI3_DIR - installation directory
HPC_SQANTI3_BIN - executable directory

Citation¶

If you publish research that uses sqanti3 you have to cite it as follows:

Tardaguila M, de la Fuente L, Marti C, et al. SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification. Genome Res. 2018;28(3):396-411. http://doi.org/10.1101/gr.222976.117

Categories¶

phylogenetics