SplAdder¶

Description¶

SplAdder, short for Splicing Adder, a toolbox for alternative splicing analysis based on RNA-Seq alignment data. Briefly, the software takes a given annotation and RNA-Seq read alignments in standardized formats, transforms the annotation into a splicing graph representation, augments the splicing graph with additional information extracted from the read data, extracts alternative splicing events from the graph and quantifies the events based on the alignment data. The quantified events can then be used for differential analysis.

Environment Modules¶

Run module spider spladder to find out what environment modules are available for this application.

Environment Variables¶

HPC_SPLADDER_DIR - installation directory
HPC_SPLADDER_BIN - executable directory

Categories¶

phylogenetics