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Spec2nii

Description

spec2nii website

This program was inspired by the imaging DICOM to NIfTI converter dcm2niix developed by Chris Rorden. All MRS(I) orientations are tested with images converted using dcm2niix. I consider the combination of images converted using dcm2niix and displayed in FSLeyes the de facto standard.

Environment Modules

Run module spider spec2nii to find out what environment modules are available for this application.

Environment Variables

  • HPC_SPEC2NII_DIR - installation directory
  • HPC_SPEC2NII_BIN - executable directory

Citation

If you publish research that uses spec2nii you have to cite it as follows:

Mikkelsen, M., Barker, P. B., Bhattacharyya, P. K., Brix, M. K., Buur, P. F., Cecil, K. M., Chan, K. L., Chen, D. Y., Craven, A. R., Cuypers, K., Dacko, M., Duncan, N. W., Dydak, U., Edmondson, D. A., Ende, G., Ersland, L., Forbes, M. A., Gao, F., Greenhouse, I., ... Edden, R. A. E. (2017). Big GABA: Edited MR spectroscopy at 24 research sites. NeuroImage, 159, 32-45. https://doi.org/10.1016/j.neuroimage.2017.07.021

Categories

phylogenetics