SortMeRNA¶
Description¶
SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. The core algorithm is based on approximate seeds and allows for fast and sensitive analyses of nucleotide sequences. The main application of SortMeRNA is filtering rRNA from metatranscriptomic data.
Environment Modules¶
Run module spider sortmerna to find out what environment modules are available for this application.
Environment Variables¶
- HPC_SORTMERNA_DIR - installation directory
- HPC_SORTMERNA_BIN - executable directory
- HPC_SORTMERNA_EXE - examples directory
Citation¶
If you publish research that uses sortmerna you have to cite it as follows:
Categories¶
biology, sequencing, ngs