SODA¶

Description¶

SODA is a tool for species delimitation using only gene tree topologies. It's a fast way of doing species delimitation and relies on a polytomy test developed by Sayyari et. al implemented inside ASTRAL package. SODA has been in our tests slightly less accurate than BPP but it is far faster.

Environment Modules¶

Run module spider soda to find out what environment modules are available for this application.

Environment Variables¶

HPC_SODA_DIR - installation directory
HPC_SODA_BIN - executable directory

Categories¶

biology