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SOAPdenovo

Description

soapdenovo website

SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for the human-sized genomes. The program is specially designed to assemble Illumina GA short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. Three versions are available: * SOAPdenovo31mer - supports kmer length of <= 31 * SOAPdenovo63mer - supports kmer length of 32-63 (2x memory use of 31mer) * SOAPdenovo127mer - supports kmer length of 63-127 (2x memory use of 63mer)

Environment Modules

Run module spider soapdenovo to find out what environment modules are available for this application.

Environment Variables

  • HPC_SOAPDENOVO_DIR - installation directory
  • HPC_SOAPDENOVO_BIN - executable directory

Categories

biology, ngs