SNPsplit¶

Description¶

SNPsplit is an allele-specific alignment sorter which is designed to read alignment files in SAM/ BAM format and determine the allelic origin of reads that cover known SNP positions.

Environment Modules¶

Run module spider snpsplit to find out what environment modules are available for this application.

Environment Variables¶

HPC_SNPSPLIT_DIR - installation directory
HPC_SNPSPLIT_BIN - executable directory

Citation¶

If you publish research that uses SNPsplit you have to cite it as follows:

SNPsplit: Allele-specific splitting of alignments between genomes with known SNP genotypes

Categories¶

biology, sequencing