SNP-Pipeline¶
Description¶
SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organisms sequenced from samples of interest to food safety.
Environment Modules¶
Run module spider snp-pipeline to find out what environment modules are available for this application.
Environment Variables¶
- HPC_SNPPIPELINE_DIR - installation directory
- HPC_SNPPIPELINE_BIN - executable directory
Citation¶
If you publish research that uses snp-pipeline you have to cite it as follows:
Categories¶
biology, phylogenetics